``miniwdl zip``
===============

``miniwdl zip`` generates a ZIP file including a given WDL source code file and any other WDL files it imports. The ZIP file can be supplied directly to ``miniwdl run``, which can extract it automatically.

.. code-block:: bash

   $ miniwdl zip path/to/my.wdl
   $ miniwdl run my.wdl.zip input1=value1 ...

Optionally, you can also include a JSON file with default workflow inputs. Any command-line arguments provided at runtime would be merged into (override) these defaults.

The ZIP file will include a MANIFEST.json identifying the top-level WDL and inputs JSON, if present. The manifest format follows `that of Amazon Genomics CLI <https://aws.github.io/amazon-genomics-cli/docs/concepts/workflows/#manifestjson-structure>`_.

Command line
------------

.. argparse::
   :module: WDL.CLI
   :func: create_arg_parser
   :prog: miniwdl
   :path: zip
   :nodescription:
   :nodefaultconst: