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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
abspath (WDL.Tree.ReadSourceResult attribute)
aliases (WDL.Tree.DocImport attribute)
alternative (WDL.Expr.IfThenElse attribute)
Any (class in WDL.Type)
Apply (class in WDL.Expr)
arguments (WDL.Expr.Apply attribute)
Array (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
available_inputs (WDL.Tree.Call attribute)
(WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
B
Base (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
bind() (WDL.Env.Bindings method)
Binding (class in WDL.Env)
Bindings (class in WDL.Env)
body (WDL.Tree.Workflow attribute)
(WDL.Tree.WorkflowSection attribute)
Boolean (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
C
Call (class in WDL.Tree)
callee (WDL.Tree.Call attribute)
callee_id (WDL.Tree.Call attribute)
children (WDL.Error.SourceNode attribute)
(WDL.Expr.Apply attribute)
(WDL.Expr.Array attribute)
(WDL.Expr.Get attribute)
(WDL.Expr.Ident attribute)
(WDL.Expr.IfThenElse attribute)
(WDL.Expr.Map attribute)
(WDL.Expr.Pair attribute)
(WDL.Expr.Placeholder attribute)
(WDL.Expr.String attribute)
(WDL.Expr.Struct attribute)
CircularDependencies
coerce() (WDL.Value.Base method)
coerces() (WDL.Type.Any method)
(WDL.Type.Base method)
command (WDL.Expr.String attribute)
(WDL.Tree.Task attribute)
complete_calls (WDL.Tree.Workflow attribute)
condition (WDL.Expr.IfThenElse attribute)
Conditional (class in WDL.Tree)
consequent (WDL.Expr.IfThenElse attribute)
copy() (WDL.Type.Array method)
(WDL.Type.Base method)
D
Decl (class in WDL.Tree)
doc (WDL.Tree.DocImport attribute)
DocImport (class in WDL.Tree)
Document (class in WDL.Tree)
E
effective_outputs (WDL.Tree.Call attribute)
(WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
EmptyArray
enter_namespace() (WDL.Env.Bindings method)
eval() (WDL.Expr.Base method)
EvalError
exceptions (WDL.Error.MultipleValidationErrors attribute)
expect() (WDL.Value.Base method)
expr (WDL.Expr.Get attribute)
(WDL.Expr.Placeholder attribute)
(WDL.Tree.Conditional attribute)
(WDL.Tree.Decl attribute)
(WDL.Tree.Scatter attribute)
(WDL.Value.Base attribute)
F
File (class in WDL.Type)
(class in WDL.Value)
filter() (WDL.Env.Bindings method)
final_referee (WDL.Tree.Gather attribute)
Float (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
from_json() (in module WDL.Value)
function_name (WDL.Expr.Apply attribute)
G
Gather (class in WDL.Tree)
gathers (WDL.Tree.WorkflowSection attribute)
Get (class in WDL.Expr)
get_node() (WDL.Tree.Workflow method)
H
has_binding() (WDL.Env.Bindings method)
has_namespace() (WDL.Env.Bindings method)
I
Ident (class in WDL.Expr)
IfThenElse (class in WDL.Expr)
imported (WDL.Tree.StructTypeDef attribute)
ImportError
imports (WDL.Tree.Document attribute)
IncompatibleOperand
IndeterminateType
infer_type() (WDL.Expr.Base method)
(WDL.Expr.Placeholder method)
info (WDL.Env.Binding attribute)
InputError
inputs (WDL.Tree.Call attribute)
(WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
Int (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
InvalidType
item_type (WDL.Type.Array attribute)
(WDL.Type.Map attribute)
items (WDL.Expr.Array attribute)
(WDL.Expr.Map attribute)
J
json (WDL.Value.Base attribute)
L
left (WDL.Expr.Pair attribute)
left_type (WDL.Type.Pair attribute)
literal_keys (WDL.Type.Map attribute)
load() (in module WDL)
load_async() (in module WDL)
Loader (class in WDL.runtime.config)
log_all() (WDL.runtime.config.Loader method)
log_unused_options() (WDL.runtime.config.Loader method)
M
Map (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
map() (WDL.Env.Bindings method)
member (WDL.Expr.Get attribute)
members (WDL.Expr.Struct attribute)
(WDL.Tree.StructTypeDef attribute)
(WDL.Type.StructInstance attribute)
merge() (in module WDL.Env)
meta (WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
MultipleDefinitions
MultipleValidationErrors
N
name (WDL.Env.Binding attribute)
(WDL.Expr.Ident attribute)
(WDL.Tree.Call attribute)
(WDL.Tree.Decl attribute)
(WDL.Tree.StructTypeDef attribute)
(WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
namespace (WDL.Tree.DocImport attribute)
namespaces (WDL.Env.Bindings attribute)
node (WDL.Error.EvalError attribute)
(WDL.Error.ValidationError attribute)
nonempty (WDL.Type.Array attribute)
NoSuchFunction
NoSuchInput
NoSuchMember
NoSuchTask
NotAnArray
Null (class in WDL.Value)
NullValue
O
optional (WDL.Type.Base attribute)
options (WDL.Expr.Placeholder attribute)
OutOfBounds
outputs (WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
P
Pair (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
parameter_meta (WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
parameters (WDL.Type.Array attribute)
(WDL.Type.Base attribute)
(WDL.Type.Map attribute)
(WDL.Type.Pair attribute)
(WDL.Type.StructInstance attribute)
parts (WDL.Expr.String attribute)
Placeholder (class in WDL.Expr)
pos (WDL.Error.EvalError attribute)
(WDL.Error.SourceNode attribute)
(WDL.Error.ValidationError attribute)
(WDL.Tree.DocImport attribute)
(WDL.Tree.SourceComment attribute)
postinputs (WDL.Tree.Task attribute)
R
read_source_default() (in module WDL)
ReadSourceResult (class in WDL)
(class in WDL.Tree)
referee (WDL.Expr.Ident attribute)
(WDL.Tree.Gather attribute)
required_inputs (WDL.Tree.Call attribute)
(WDL.Tree.Task attribute)
(WDL.Tree.Workflow attribute)
resolve() (WDL.Env.Bindings method)
resolve_binding() (WDL.Env.Bindings method)
resolve_file_import() (in module WDL)
rewrite_env_files() (in module WDL.Value)
rewrite_files() (in module WDL.Value)
right (WDL.Expr.Pair attribute)
right_type (WDL.Type.Pair attribute)
run() (in module WDL.runtime)
runtime (WDL.Tree.Task attribute)
RuntimeError
S
Scatter (class in WDL.Tree)
scatter_depth (WDL.Tree.WorkflowNode attribute)
section (WDL.Tree.Gather attribute)
source_comments (WDL.Tree.Document attribute)
source_lines (WDL.Tree.Document attribute)
source_text (WDL.Error.ValidationError attribute)
(WDL.Tree.Document attribute)
(WDL.Tree.ReadSourceResult attribute)
SourceComment (class in WDL.Tree)
SourceNode (class in WDL.Error)
SourcePosition (class in WDL.Error)
StaticTypeMismatch
StrayInputDeclaration
String (class in WDL.Expr)
(class in WDL.Type)
(class in WDL.Value)
Struct (class in WDL.Expr)
(class in WDL.Value)
struct_typedefs (WDL.Tree.Document attribute)
StructInstance (class in WDL.Type)
StructTypeDef (class in WDL.Tree)
subtract() (WDL.Env.Bindings method)
SyntaxError
T
Task (class in WDL.Tree)
tasks (WDL.Tree.Document attribute)
text (WDL.Tree.SourceComment attribute)
type (WDL.Expr.Base attribute)
(WDL.Tree.Decl attribute)
(WDL.Value.Base attribute)
type_id (WDL.Tree.StructTypeDef attribute)
(WDL.Type.StructInstance attribute)
type_name (WDL.Type.StructInstance attribute)
typecheck() (WDL.Expr.Base method)
(WDL.Tree.Document method)
U
UncallableWorkflow
unify() (in module WDL.Type)
UnknownIdentifier
uri (WDL.Tree.DocImport attribute)
V
ValidationError
value (WDL.Env.Binding attribute)
(WDL.Expr.Boolean attribute)
(WDL.Expr.Float attribute)
(WDL.Expr.Int attribute)
(WDL.Value.Base attribute)
values_from_json() (in module WDL)
values_to_json() (in module WDL)
variable (WDL.Tree.Scatter attribute)
W
WDL (module)
WDL.Env (module)
WDL.Error (module)
WDL.Expr (module)
WDL.Lint (module)
WDL.runtime (module)
WDL.runtime.config (module)
WDL.Tree (module)
WDL.Type (module)
WDL.Value (module)
wdl_version (WDL.Tree.Document attribute)
with_empty_namespace() (WDL.Env.Bindings method)
Workflow (class in WDL.Tree)
workflow (WDL.Tree.Document attribute)
workflow_node_dependencies (WDL.Tree.WorkflowNode attribute)
workflow_node_id (WDL.Tree.WorkflowNode attribute)
WorkflowNode (class in WDL.Tree)
WorkflowSection (class in WDL.Tree)
wrap_namespace() (WDL.Env.Bindings method)
WrongArity
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